graft_cv/peak_finder.h

#pragma once
#include <vector>

namespace graft_cv {
	const float EPS = 2.2204e-16f;

	void diff(std::vector<float> in, std::vector<float>& out);

	void vectorElementsProduct(std::vector<float> a, std::vector<float> b, std::vector<float>& out);

	void findIndicesLessThan(std::vector<float> in, float threshold, std::vector<int>& indices);

	void selectElementsFromIndices(std::vector<float> in, std::vector<int> indices, std::vector<float>& out);

	void selectElementsFromIndices(std::vector<int> in, std::vector<int> indices, std::vector<int>& out);

	void signVector(std::vector<float> in, std::vector<int>& out);

	void scalarProduct(float scalar, std::vector<float> in, std::vector<float>& out);

	/*
	Inputs
	x0: input signal
	extrema: 1 if maxima are desired, -1 if minima are desired
	includeEndpoints - If true the endpoints will be included as possible extrema otherwise they will not be included
	Output
	peakInds: Indices of peaks in x0
	*/
	void findPeaks(std::vector<float> x0, std::vector<int>& peakInds, bool includeEndpoints = true, float extrema = 1);

	void indexPeaks(
		std::vector<float>&stem_width,
		std::vector<int>&peak_indices, 
		float mu, 
		std::vector<float>& peak_power);
		
	
}